Preparation and Molecular Docking of Some Heterocyclic Compounds Containing Nitrogen and Oxygen Atoms

Authors

  • Saad Salem Jassim University of Kirkuk

DOI:

https://doi.org/10.62383/ikg.v3i1.2799

Keywords:

Chemical Synthesis, Cyclization, Isoxazole, Molecular Docking, Oxazol

Abstract

Derivatives of substituted oxazol-5-one (1–3) and substituted oxazolo-isoxazole (4–6) were successfully synthesized through a multi-step reaction process. Initially, glycine was reacted with acetic anhydride to produce acetyl glycine as a key intermediate. This intermediate subsequently underwent a condensation reaction with various substituted benzaldehydes, leading to the formation of oxazol-5-one derivatives (1–3). In the final synthetic step, these oxazol-5-one derivatives were reacted with hydroxylamine hydrochloride to yield the corresponding oxazolo-isoxazole compounds (4–6). The chemical structures of all synthesized compounds were characterized and confirmed using Fourier Transform Infrared (FT-IR) spectroscopy and proton nuclear magnetic resonance (¹H NMR) spectroscopy. Furthermore, molecular docking studies were carried out to evaluate the potential biological interactions of the prepared compounds. Docking simulations were performed using PyRx software, while visualization and interaction analysis were conducted employing PyMOL and Discovery Studio. The combined experimental and computational approaches provide valuable insights into the structural properties and potential biological relevance of the synthesized compounds.

References

Agrawal, N., & Mishra, P. (2018). The synthetic and therapeutic expedition of isoxazole and its analogs. Medicinal Chemistry Research, 27(5), 1309–1344. https://doi.org/10.1007/s00044-018-2152-6

Al-Tufah, M. M., Beebaeny, S., Jasim, S. S., & Mohammed, B. L. (2023). Synthesis and characterization of ethyl dioxoisoindolinyl cyclohexenone carboxylate derivatives from some chalcones and its biological activity assessment. Chemical Methodologies, 7, 408–418. https://doi.org/10.22034/CHEMM.2023.388126.1654

Cazzaniga, G., Tresoldi, A., Gelain, A., Meneghetti, F., Mori, M., & Villa, S. (2024). Eco-friendly bio-based solvents for the acetylation of the amino group of amino acids. Chemistry & Biodiversity, 21(2), e202301729. https://doi.org/10.1002/cbdv.202301729

Dudik, A. S., Zanakhov, T. O., Galenko, E. E., Novikov, M. S., & Khlebnikov, A. F. (2025). Azirinyl-substituted nitrile oxides: Generation and use in the synthesis of isoxazole-containing heterocyclic hybrids. Molecules, 30(13), Article 2834. https://doi.org/10.3390/molecules30132834

Gujjarappa, R., Sravani, S., Kabi, A. K., Garg, A., Vodnala, N., Tyagi, U., & Malakar, C. C. (2022). An overview on biological activities of oxazole, isoxazoles and 1,2,4-oxadiazoles derivatives. In Nanostructured biomaterials: Basic structures and applications (pp. 379–400). Springer. https://doi.org/10.1007/978-981-16-8399-2_10

Jasim, S. S., Abdulwahid, J. H., Beebany, S., & Mohammed, B. L. (2023). Synthesis, identification, and antibacterial effect assessment of some new 1,4-thiazepines derived from substituted diphenyl acrylamides and diphenyl dienones. Chemical Methodologies, 7, 509–523. https://doi.org/10.22034/CHEMM.2023.392659.1668

Jassim, S. S. (2019). Preparation and identification of Schiff bases (1,3-oxazepine or diazepine-7,4-dione) and evaluation of their antibacterial activity. Kirkuk Journal of Science, 14(2), 249–272. https://doi.org/10.32894/kujss.2019.14.2.15

Jassim, S. S. (2019). Synthesis and characterization of some bis-1,3-oxazepine-4,7-dione and 1,3-diazepine-4,7-dione derivatives. Kirkuk Journal of Science, 13(2), 149–165. https://doi.org/10.32894/kujss.2018.145725

Jayasinghe, R. N., Padukkage Dona, N. T., Lorensu Hewage, V. C., Egodawaththa, N. M., Nesnas, N., & Gunaratna, M. J. (2025). Evaluation of in silico and in vitro antidiabetic properties of 4-(hydroxysubstituted arylidene)-2-phenyloxazol-5(4H)-one derivatives. ACS Omega, 10(8), 8009–8022. https://doi.org/10.1021/acsomega.4c09061

Jirjees, I. (2022). Design and characterization of oxazepine new derivatives. International Journal of Health Sciences, 6(S2), 7380–7387. https://doi.org/10.53730/ijhs.v6nS2.6710

Kakkar, S., & Narasimhan, B. (2019). A comprehensive review on biological activities of oxazole derivatives. BMC Chemistry, 13(1), Article 16. https://doi.org/10.1186/s13065-019-0531-9

Khalaf, H. M. M., Gouda, M., Amer, A. A., Abdelhamid, A. A., & Abdou, A. (2024). Design and synthesis of new mixed azo-hydroxyquinoline complexes: In vitro anti-inflammatory, antifungal, antibacterial, theoretical, and molecular docking interactions investigation. Journal of Molecular Structure, 1307, Article 138016. https://doi.org/10.1016/j.molstruc.2024.138016

Nariya, P., Patel, M., & Thakore, S. (2024). Synthesis, mesomorphic properties, and DFT calculations of curcumin-oxazole modified Schiff base liquid crystals [Manuscript]. SSRN. https://ssrn.com/abstract=4921559

Nguyen, C. T., Dinh, D. T. H., Van Nguyen, T., Le, G. D., & Nguyen, H. C. (2019). Synthesis and antimicrobial activity of some 1-arylideneamino-4-(4-chlorobenzylidene)-2-methyl-1H-imidazolin-5(4H)-one compounds. Oriental Journal of Chemistry, 35(2), 822–829. https://doi.org/10.13005/ojc/350245

Potkin, V., Petkevich, S., Kletskov, A., Dikusar, E., Zubenko, Y. S., Zhukovskaya, N., & Pashkevich, S. (2013). Synthesis of functionally substituted isoxazole and isothiazole derivatives. Russian Journal of Organic Chemistry, 49(10), 1523–1533. https://doi.org/10.1134/S1070428013100205

Rani, A., Khan, J., Aslam, M., Ali, A., Kamthan, M., Pandey, G., & Nand, B. (2025). Design, synthesis, and biological evaluation of Schiff-base isoxazole hybrids: Exploring novel antimicrobial agents. Bioorganic Chemistry, 159, Article 108428. https://doi.org/10.1016/j.bioorg.2025.108428

Sahoo, M., Sahoo, B., Panda, J., & Kumar, A. (2017). Microwave-induced synthesis of substituted isoxazoles as potential antimicrobial agents. Current Microwave Chemistry, 4(2), 146–151. https://doi.org/10.2174/2213335603666160926101734

Vashisht, K., Sethi, P., Bansal, A., & Bansal, P. (2025). Antimicrobial activity of isoxazole derivatives: A brief overview. Vietnam Journal of Chemistry, 63(2), 195–213. https://doi.org/10.1002/vjch.202400029

Walunj, Y., Mhaske, P., & Kulkarni, P. (2021). Application, reactivity and synthesis of isoxazole derivatives. Mini-Reviews in Organic Chemistry, 18(1), 55–77. https://doi.org/10.2174/1570193X17999200511131621

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Published

2026-01-19

How to Cite

Saad Salem Jassim. (2026). Preparation and Molecular Docking of Some Heterocyclic Compounds Containing Nitrogen and Oxygen Atoms . Inovasi Kesehatan Global, 3(1), 94–108. https://doi.org/10.62383/ikg.v3i1.2799